Key to Result Symbols

SS sequence
  • 1: loops
  • 2: α-helices
  • 2: β-helices

For more informations about this parameter, please read the documentation.

Occurrence
  • rare
    0 ≤ occ < 5
  • few
    5 ≤ occ < 30
  • recurrent
    30 ≤ occ < 150
  • recurrent recurrent
    150 ≤ occ < 500
  • recurrent recurrent recurrent
    occ ≥ 500

For more informations about this parameter, please read the documentation.

Over-representation
  • under-represented
    OR < 5.97
  • not significant
    -5.97 ≤ OR < 5.97
  • over-represented
    5.97≤ OR < 20
  • over-represented over-represented
    20 ≤ OR < 100
  • over-represented over-represented over-represented
    OR ≥ 100

For more information about this parameter, please read the documentation.

Conservation
  • Conserved residues
    4.4 ≤ Zmax < 20
  • Conserved residues Conserved residues
    Zmax ≥ 20

For more information about this parameter, please read the documentation.

Expert mode allows you to view words raw statistics.

Note that this switch could be slow for huge tables.

SA-Mot results for 1ox1

SA-Mot founds 2 chain(s) for your input structure. Each chain has been analyzed separately. Your results follow.

Chain A : 16-245

Chain sequences

AA: IVGGYTCGANTVPYQVSLNSGYHFCGGSLINSQWVVSAAHCYKSGIQVRLGEDNINVVEG 75
 SL: --USLYPRYUOZGBQNMMNGFIKGIMTLLGIYCQTMXYPBBSXKUSMLNTUSGZGZIPGR 58
 SS: --1111111111111333311111133331111133311111111133331111111111 58
AA: NEQFISASKSIVHPSYNSNTLNNDIMLIKLKSAASLNSRVASISLPTSCASAGTQCLISG 135
 SL: FSTMXLKPIMMNKHVSNPZCDSUGQTMNMLPIKLKNXYZIXLLKLKPIKKLYUSLXLTXX 120
 SS: 113333311333311111111111133333113333311133333311111111333333 120
AA: WGNTKSSGTSYPDVLKCLKAPILSDSSCKSAYPGQITSNMFCAGYLEGGKDSCQGDSGGP 195
 SL: HSYPQPIJJGNLPIKNTTMXLKLKHVWVWAVCNUEQNHBQTLTJJPBRFQJKXJUESUSJ 180
 SS: 111111111133113333333333122222211111111133333111111111111113 180
AA: VVCSGKLQGIVSWGSGCAQKNKPGVYTKVCNYVSWIKQTIASN 238
 SL: MNTUFQPGIMKXJTYFRUSKUQNKLNKLGBBZOVWAVWVWAV- 222
 SS: 333111111111111111111133333311111222222222- 222

HMM-SA word statistics

# Words Recurrent Rare Ubiquitous Functional candidate
77 51 0 2 3
Need some help? Please refer to the documentation.
This table resumes your input structure through HMM-SA word statistics.

HMM-SA word details

# SA-W Pos AA Occ OR RMSd AACons ORsf
1 USLY 16-22 IVGGYTC
+
51
equal
-0.29 		0.91
+
7.37
2 SLYP 17-23 VGGYTCG
-
29
equal
-0.55 		NA NA
3 YPRY 19-25 GYTCGAN
-
14
equal
-1.22 		NA NA
4 PRYU 20-26 YTCGANT
+
61
equal
-1.15 		1.10
+
13.43
5 RYUO 21-27 TCGANTV
+
35
equal
0.39 		1.01
+
8.20
6 YUOZ 22-28 CGANTVP
+
62
equal
0.90 		0.61
+
9.14
7 UOZG 23-29 GANTVPY
-
28
equal
3.53 		NA NA
8 OZGB 24-30 ANTVPYQ
+
35
+
8.88 		0.57
+
13.62 		Functional candidate
9 ZGBQ 25-31 NTVPYQV
+
122
+ +
41.68 		0.61
22.41
10 GFIK 33-41 LNSGYHF
-
12
equal
1.94 		NA NA
11 FIKG 34-42 NSGYHFC
-
10
equal
0.53 		NA NA
12 IKGI 37-43 SGYHFCG
+
82
equal
1.67 		0.83
+
7.11
13 GIYC 45-51 SLINSQW
+ +
205
+ +
67.35 		0.48
+
15.20 		Functional candidate
14 IYCQ 46-52 LINSQWV
+ +
202
+ + +
149.40 		0.43
+
15.77 		Functional candidate
15 YPBB 53-59 VSAAHCY
+ +
181
+
15.50 		0.57
+
14.00
16 PBBS 54-60 SAAHCYK
+
104
+
6.47 		0.51
+
11.30
17 BSXK 56-62 AHCYKSG
-
21
equal
4.59 		NA NA
18 SXKU 57-63 HCYKSGI
-
21
equal
0.31 		NA NA
19 USGZ 66-73 RLGEDNI
+
48
equal
-1.70 		0.81
+
8.01
20 SGZG 67-74 LGEDNIN
+
35
equal
5.48 		0.76
+
6.11
21 GZGZ 69-75 GEDNINV
-
29
equal
4.03 		NA NA
22 ZGZI 70-76 EDNINVV
-
10
equal
0.83 		NA NA
23 GZIP 71-77 DNINVVE
+
30
equal
-2.67 		0.86
3.99
24 ZIPG 72-78 NINVVEG
-
26
equal
-0.46 		NA NA
25 IPGR 73-79 INVVEGN
-
14
equal
-1.63 		NA NA
26 PGRF 74-80 NVVEGNE
+
35
equal
4.95 		1.18
+
10.23
27 GRFS 75-81 VVEGNEQ
+
30
equal
1.52 		1.48
+
10.78
28 KHVS 89-95 IVHPSYN
+
91
+
17.25 		0.44
+
13.85
29 SNPZ 92-98 PSYNSNT
-
19
equal
-0.69 		NA NA
30 PZCD 94-100 YNSNTLN
+ + +
938
+ + +
300.00 		0.36
51.49 		Ubiquitous
31 ZCDS 95-101 NSNTLNN
+ + +
1162
+ + +
300.00 		0.46
51.15 		Ubiquitous
32 CDSU 96-102 SNTLNND
+
49
-
-10.81 		0.60
+
14.80
33 DSUG 97-103 NTLNNDI
+
47
equal
-2.94 		0.74
+
8.20
34 SUGQ 98-104 TLNNDIM
+
31
equal
3.07 		0.68
+
12.48
35 IKLK 108-114 LKSAASL
+
61
+
6.29 		0.82
+
7.75
36 KLKP 120-127 SISLPTS
+
90
+
9.33 		0.65
+
7.65
37 KPIK 122-129 SLPTSCA
+
82
equal
2.90 		0.79
+
10.83
38 PIKK 123-130 LPTSCAS
+ +
172
equal
5.53 		0.72
20.53
39 KKLY 125-133 TSCASAG
+
51
+
6.28 		0.65
+
10.31
40 KLYU 127-134 SCASAGT
+
71
+
10.60 		0.66
+
14.34
41 HSYP 139-145 SGWGNTK
-
24
equal
1.88 		NA NA
42 SYPQ 140-146 GWGNTKS
-
26
equal
-0.73 		NA NA
43 YPQP 141-147 WGNTKSS
+
39
-
-6.21 		0.86
+
8.81
44 PQPI 142-148 GNTKSSG
+ +
275
equal
-0.84 		1.05
+
7.88
45 QPIJ 143-149 NTKSSGT
+
134
equal
-0.79 		1.39
+
13.95
46 PIJJ 144-150 TKSSGTS
+
149
equal
3.52 		1.82
20.58
47 IJJG 145-151 KSSGTSY
-
22
equal
1.37 		NA NA
48 KLKH 160-166 APILSDS
+
120
+
16.10 		0.62
+
12.79
49 CNUE 170-176 SAYPGQI
+
62
+ +
50.35 		0.62
+
11.20
50 EQNH 173-179 PGQITSN
-
23
equal
0.78 		NA NA
51 QNHB 174-180 GQITSNM
+
146
+
11.44 		0.58
+
13.06
52 JJPB 182-187 CAGYLEG
+
46
equal
3.51 		1.05
+
15.77
53 JPBR 183-188A AGYLEGG
-
6
equal
1.42 		NA NA
54 PBRF 184A-188 GYLEGGK
-
11
equal
0.54 		NA NA
55 BRFQ 184-189 YLEGGKD
-
14
equal
3.05 		NA NA
56 RFQJ 185-190 LEGGKDS
-
18
equal
3.64 		NA NA
57 FQJK 186-191 EGGKDSC
-
26
equal
4.76 		NA NA
58 JKXJ 188A-193 GKDSCQG
-
17
equal
5.20 		NA NA
59 KXJU 188-194 KDSCQGD
+
69
+
19.87 		1.04
+
19.42
60 JUES 190-196 SCQGDSG
+
40
+ +
22.39 		1.08
32.14
61 UESU 191-197 CQGDSGG
+
58
+ +
26.57 		0.72
31.36
62 ESUS 192-198 QGDSGGP
+
72
+
10.22 		0.67
+
15.96
63 SUSJ 193-199 GDSGGPV
-
10
equal
-0.82 		NA NA
64 UFQP 200-210 VCSGKLQ
+
128
equal
3.16 		0.57
25.25
65 FQPG 201-211 CSGKLQG
+
101
equal
5.08 		1.13
+
11.38
66 QPGI 202-212 SGKLQGI
+
102
-
-17.10 		0.66
+
9.03
67 GIMK 204-214 KLQGIVS
+
108
equal
4.26 		0.90
+
7.77
68 JTYF 213-220 VSWGSGC
-
6
equal
4.15 		NA NA
69 YFRU 215-221 WGSGCAQ
-
8
equal
0.72 		NA NA
70 FRUS 216-222 GSGCAQK
+
77
equal
-0.75 		1.76
+
12.74
71 RUSK 217-223 SGCAQKN
+
75
equal
-0.49 		1.02
+
12.59
72 USKU 219-224 GCAQKNK
+
72
equal
-0.78 		0.86
+
15.93
73 SKUQ 220-225 CAQKNKP
+
75
equal
0.30 		0.77
+
14.49
74 UQNK 221-227 QKNKPGV
-
28
equal
0.92 		NA NA
75 KLGB 227-233 VYTKVCN
+
37
equal
0.75 		0.49
+
6.52
76 GBBZ 229-235 TKVCNYV
+ +
175
equal
-0.28 		0.54
+
11.30
77 BBZO 230-236 KVCNYVS
+ +
214
+ +
22.38 		0.56
+
19.23
Need some help? Please refer to the documentation and to the legend on the left panel.
This table describes information related to each detected HMM-SA word from your input structure chain.

Chain B : 1-10

Chain sequences

AA: SCTRSIPPQCC 11
 SL: --KHQFFRL-- 7
 SS: --11111111- 8

HMM-SA word statistics

# Words Recurrent Rare Ubiquitous Functional candidate
3 1 1 0 0
Need some help? Please refer to the documentation.
This table resumes your input structure through HMM-SA word statistics.

HMM-SA word details

# SA-W Pos AA Occ OR RMSd AACons ORsf
1 KHQF 1-7 SCTRSIP
--
3
equal
-2.08 		NA NA
2 HQFF 2-8 CTRSIPP
-
23
equal
0.28 		NA NA
3 QFFR 3-9 TRSIPPQ
+ +
176
+ +
52.97 		1.75
40.97
Need some help? Please refer to the documentation and to the legend on the left panel.
This table describes information related to each detected HMM-SA word from your input structure chain.